arXiv:2607.01278v1 Announce Type: new Abstract: The research proposes a multilayer Q-matrix-embedded neural network for cognitive diagnosis (M-QCDNet), which integrates the structural interpretability of cognitive diagnostic models (CDMs) with the deep learning neural network (NN). M-QCDNet structures the item-skill relationship using the Q-matrix as a structural prior, ensuring latent mastery profiles remain interpretable and consistent with cognitive theory, followed by the proposed loss function with an L2 penalty to penalize skills not aligned with the Q-matrix and to balance predictive performance and structural alignment. Corresponding evaluation matrices, the interpretable alignment-based metrics that quantify the degree to which predicted skill activations correspond to item-level skills, were further developed. M-QCDNet offers practical benefits for classroom practice, enabling early detection of learning difficulties and supporting mastery-based interventions. By embedding di...